PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_4450V3.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NF-YC
Protein Properties Length: 231aa    MW: 26323.2 Da    PI: 5.7723
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_4450V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC173.22.9e-54591631102
              NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 
                        ql +fw++q   +e+++dfk h+lPlarikki+k+dedvkmi+aeaPvl+skace+fileltlrsw+h+eenkrrtl+++dia a+tr dif
  Pp3c26_4450V3.1.p  59 QLSQFWQQQmqeMEQVNDFKTHQLPLARIKKIMKSDEDVKMIAAEAPVLFSKACEMFILELTLRSWIHTEENKRRTLQRNDIAGAITRGDIF 150
                        7999***998889******************************************************************************* PP

              NF-YC  90 dflvdivprdelk 102
                        dflvdivprdelk
  Pp3c26_4450V3.1.p 151 DFLVDIVPRDELK 163
                        **********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471139.72E-3334153IPR009072Histone-fold
Gene3DG3DSA:1.10.20.107.9E-3772145IPR009072Histone-fold
PfamPF008083.2E-2181144IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAAQQHPHIP PSSAPQMSHP GAVMPLQMHY PQAQQQMMPQ LGDQQMQPQL HYQQIQKQQL  60
SQFWQQQMQE MEQVNDFKTH QLPLARIKKI MKSDEDVKMI AAEAPVLFSK ACEMFILELT  120
LRSWIHTEEN KRRTLQRNDI AGAITRGDIF DFLVDIVPRD ELKEEDLGVP WTGVPGDGSV  180
PYGGIFYPPM AGQQMHHSMG APEMMVGQPP NPQMMYQPPQ TAFVPEQQQQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C2e-455315912119HapE
4g92_C2e-455315912119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131137RRTLQRN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.41650.0gametophore| protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008346078.13e-69PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008346079.13e-69PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008356118.13e-69PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008356119.13e-69PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008372003.13e-69PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ9SMP09e-66NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA9NUT01e-73A9NUT0_PICSI; Putative uncharacterized protein
STRINGPP1S159_32V6.21e-167(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.11e-57nuclear factor Y, subunit C1